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  "Date": "2026-02-06",
  "Title": "Modular Crop Growth Simulations",
  "Description": "A cross-platform representation of models as sets of\nequations that facilitates modularity in model building and\nallows users to harness modern techniques for numerical\nintegration and data visualization. Documentation is provided\nby several vignettes included in this package; also see\nLochocki et al. (2022) <doi:10.1093/insilicoplants/diac003>.",
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  "VignetteBuilder": "knitr",
  "SystemRequirements": "C++17, GNU make",
  "License": "MIT + file LICENSE",
  "LazyData": "true",
  "ByteCompile": "TRUE",
  "URL": "https://github.com/biocro/biocro, https://biocro.org",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "make",
  "Repository": "https://biocro.r-universe.dev",
  "Date/Publication": "2026-02-09 17:29:47 UTC",
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  "Packaged": {
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    "User": "root"
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  "Author": "Justin M. McGrath [cre, aut] (ORCID:\n<https://orcid.org/0000-0002-7025-3906>),\nEdward B. Lochocki [aut] (ORCID:\n<https://orcid.org/0000-0002-4912-9783>),\nYufeng He [aut] (ORCID: <https://orcid.org/0000-0001-9895-1880>),\nScott W. Oswald [aut] (ORCID: <https://orcid.org/0000-0002-1906-0340>),\nScott Rohde [aut] (ORCID: <https://orcid.org/0000-0001-9030-0936>),\nDeepak Jaiswal [aut] (ORCID: <https://orcid.org/0000-0002-4077-3919>),\nMegan L. Matthews [aut] (ORCID:\n<https://orcid.org/0000-0002-5513-9320>),\nFernando E. Miguez [aut] (ORCID:\n<https://orcid.org/0000-0002-4627-8329>),\nStephen P. Long [aut] (ORCID: <https://orcid.org/0000-0002-8501-7164>),\nDan Wang [ctb],\nDavid LeBauer [ctb] (ORCID: <https://orcid.org/0000-0001-7228-053X>),\nBioCro authors [cph],\nBoost Organization [cph] (Copyright holder of included Boost library)",
  "Maintainer": "Justin M. McGrath <jmcgrath@illinois.edu>",
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    "cases_from_csv",
    "compare_model_output",
    "evaluate_module",
    "get_all_modules",
    "get_all_ode_solvers",
    "get_all_quantities",
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    "partial_run_biocro",
    "quantity_list_from_names",
    "run_biocro",
    "run_model_test_cases",
    "system_derivatives",
    "test_module",
    "test_module_library",
    "update_csv_cases",
    "update_stored_model_results",
    "validate_dynamical_system_inputs"
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      "object": "annualDB",
      "class": [
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        "Stem",
        "Leaf",
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      "table": true,
      "tojson": true
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      "object": "annualDB2",
      "class": [
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      ],
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        "Stem",
        "Leaf",
        "Root",
        "Rhiz",
        "LAI"
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      "table": true,
      "tojson": true
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      "title": "Global annual mean atmopspheric CO2 levels",
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        "Catm",
        "unc"
      ],
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      "table": true,
      "tojson": true
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      "table": true,
      "tojson": true
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      "table": false,
      "tojson": true
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      "class": [
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      ],
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        "Qp",
        "temp",
        "rh"
      ],
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      "table": true,
      "tojson": true
    },
    {
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      "title": "Complete Miscanthus assimilation field data",
      "object": "obsBeaC",
      "class": [
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      ],
      "fields": [
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        "hour",
        "A",
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        "AirT"
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      "table": true,
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        "Tl",
        "Rh"
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      "table": true,
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      "object": "soil_parameters",
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      "table": true,
      "tojson": true
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      "class": [
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      "table": false,
      "tojson": true
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      "title": "Soybean-BioCro circadian clock model definition",
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      "table": false,
      "tojson": true
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      "title": "Champaign, IL weather data for Soybean-BioCro",
      "object": "soybean_weather",
      "class": [
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      "fields": [],
      "table": true,
      "tojson": true
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      "title": "Champaign, IL weather data",
      "object": "cmi_weather_data",
      "class": [
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      "fields": [],
      "table": true,
      "tojson": true
    },
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      "title": "Willow model definition",
      "object": "willow",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
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  "_help": [
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      "title": "Add a time component to input",
      "topics": [
        "add_time_to_weather_data"
      ]
    },
    {
      "page": "annualDB",
      "title": "Miscanthus dry biomass data.",
      "topics": [
        "annualDB",
        "annualDB2"
      ]
    },
    {
      "page": "catm_data",
      "title": "Global annual mean atmopspheric CO2 levels",
      "concept": [
        "weather"
      ],
      "topics": [
        "catm_data"
      ]
    },
    {
      "page": "cmi_soybean_weather_data",
      "title": "Champaign, IL weather data for Soybean-BioCro",
      "concept": [
        "weather"
      ],
      "topics": [
        "cmi_soybean_weather_data",
        "soybean_weather"
      ]
    },
    {
      "page": "cmi_weather_data",
      "title": "Champaign, IL weather data",
      "concept": [
        "weather"
      ],
      "topics": [
        "cmi_weather_data",
        "weather"
      ]
    },
    {
      "page": "compare_model_output",
      "title": "Compare new and stored results for a BioCro model test case",
      "topics": [
        "compare_model_output"
      ]
    },
    {
      "page": "crop_model_definitions",
      "title": "Crop model definitions",
      "topics": [
        "crop_model_definitions"
      ]
    },
    {
      "page": "default_ode_solvers",
      "title": "Default ODE solver settings",
      "topics": [
        "default_ode_solvers"
      ]
    },
    {
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      "title": "Validating dynamical system inputs",
      "topics": [
        "dynamical_system",
        "validate_dynamical_system_inputs"
      ]
    },
    {
      "page": "get_all",
      "title": "Get lists of modules, quantities, and solvers",
      "topics": [
        "get_all",
        "get_all_modules",
        "get_all_ode_solvers",
        "get_all_quantities"
      ]
    },
    {
      "page": "get_growing_season_climate",
      "title": "Truncate weather data to one growing season",
      "topics": [
        "get_growing_season_climate"
      ]
    },
    {
      "page": "miscanthus_x_giganteus",
      "title": "Miscanthus model definition",
      "concept": [
        "crop_models"
      ],
      "topics": [
        "miscanthus_x_giganteus"
      ]
    },
    {
      "page": "model_test_case",
      "title": "Define BioCro model test cases",
      "topics": [
        "model_test_case"
      ]
    },
    {
      "page": "model_testing",
      "title": "The BioCro model testing system",
      "topics": [
        "model_testing"
      ]
    },
    {
      "page": "module_case_files",
      "title": "Define and modify BioCro module test case files",
      "topics": [
        "add_csv_row",
        "initialize_csv",
        "module_case_files",
        "update_csv_cases"
      ]
    },
    {
      "page": "module_creators",
      "title": "Create instances of modules",
      "topics": [
        "module_creators"
      ]
    },
    {
      "page": "module_paste",
      "title": "Prepend library name to module names",
      "topics": [
        "module_paste"
      ]
    },
    {
      "page": "module_testing",
      "title": "The BioCro module testing system",
      "topics": [
        "module_testing"
      ]
    },
    {
      "page": "module_write",
      "title": "Generate a BioCro module header file.",
      "topics": [
        "module_write"
      ]
    },
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      "page": "modules",
      "title": "BioCro module functions",
      "topics": [
        "evaluate_module",
        "modules",
        "module_info",
        "module_response_curve",
        "quantity_list_from_names"
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    {
      "page": "obsBea",
      "title": "Miscanthus assimilation field data",
      "topics": [
        "obsBea"
      ]
    },
    {
      "page": "obsBeaC",
      "title": "Complete Miscanthus assimilation field data",
      "topics": [
        "obsBeaC"
      ]
    },
    {
      "page": "obsNaid",
      "title": "Miscanthus assimilation data",
      "topics": [
        "obsNaid"
      ]
    },
    {
      "page": "partial_application",
      "title": "Convenience Functions for Partial Application",
      "topics": [
        "partial_application",
        "partial_evaluate_module",
        "partial_run_biocro"
      ]
    },
    {
      "page": "run_biocro",
      "title": "Simulate Crop Growth with BioCro",
      "topics": [
        "run_biocro"
      ]
    },
    {
      "page": "run_model_test_cases",
      "title": "Run BioCro model test cases",
      "topics": [
        "run_model_test_cases"
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      "title": "Soil properties",
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        "soil_parameters"
      ]
    },
    {
      "page": "soybean",
      "title": "Soybean-BioCro model definition",
      "concept": [
        "crop_models"
      ],
      "topics": [
        "soybean"
      ]
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